It does make sense. I've been struggling with this for months as I've had snapped side cables as well as top cable so have had to dismantle completely to rethread both units - poor Pleo has his neck held together with surgical clamps for weeks! Both IMR and I have had to dismantle and put our Pleos back together more times than we can count! I will add more pics to these threads as we go, but I work horrifically slowly and am gutless to boot - IMR took the bull by the horns and did her wonderful videos, but we both, we all, want to get as much of this absolutely correct as we can.
It does seem that the position sensors are the key to all this - if you've not read this thread it might be helpful:
http://bobthepleo.com/forums/index.php?topic=939.0For what it's worth ......... I might be tempted in your position to carry on with it as it is ........... as it's kind of working ...... but if you do dare to go back in, any thoughts or feedback would be very, very helpful. Thanks!

Also FWIW I did find it useful to run 'Dinomite static' on an SD card in the Pleo to make sure the Pleo was back in a neutral position. All it does is hold the Pleo permanently in the packing position (for the purposes of running the Pleo whilst linked to Dinomite via USB) - but it's very useful if you think you might have moved the positions whilst dismantling - my 'packing position' button didn't seem to be working properly.